I am finally confident that I have this issue resolved.
I have not been updating this adventure as it has been frustrating enough to deal with as I fought it but wanted to give closure to the issue and help anyone with similar issues.
The fix was to replace the PCM. I bought a replacement from flag ship one
www.fs1inc.com . I don't recommend these guys to anyone. They took nearly a month wen the guaranteed five business days or less. I used them because they claimed to write my VIN to the PCM and would be a plug and play option for anyone running a stock tune.
Next hurdle: Getting my tune onto the new PCM.
I have a few mods from my donor including a tune. I thought it would be as simple as moving a PDF from one SD card to another for anyone with HP tuners. I assumed wrong. After dealing with self proclaimed expert DIY tuners. I was out $100 for each PCM credits and $100 to the guy who couldn't get it done. Also, wasting over a month of driving season before he quit responding to my messages.
Found a semi local tuner who's shop name is Goblin Garage coincidentally. He did a great job at moving the tune over. He will be my tuner for everything moving forward. He also had to do a relearn on the crank sensor which required his snap-on scanner. HP tuners couldn't get it.
I have since put on about 450 miles with zero hiccups. I am using the car as my daily driver to make up for lost time. I do not know what killed the old PCM but the new one works as it should.
Thank you to everyone who helped me out. This forum is fantastic!